PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082029001
Common NameGSBRNA2T00082029001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 198aa    MW: 21560.1 Da    PI: 9.6095
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082029001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.56.8e-392685362
               zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         +++l+cprCds+ntkfCyynny+lsqP +fCk+CrryWtkGGalrnvPvGgg+rkn k+s
  GSBRNA2T00082029001 26 QEQLNCPRCDSQNTKFCYYNNYNLSQPLHFCKSCRRYWTKGGALRNVPVGGGTRKNAKRS 85
                         7899****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.0E-322783IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-242984IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5562983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MQDPAAYYQS MMAKPQQQQQ PQFPVQEQLN CPRCDSQNTK FCYYNNYNLS QPLHFCKSCR  60
RYWTKGGALR NVPVGGGTRK NAKRSTTSPT SPSNNKKTKN TDPDPNSQSA HKPDTEPTRM  120
LYGFPIGDQD VKGMEMSGGG SFSSLLASNM QLGLGGIVLD GSGWDPGMGL RRSEAGNGRG  180
GGGNPWTDLA MNRVEKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.208800.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893441e-163AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672507.11e-122PREDICTED: dof zinc finger protein DOF3.1-like
RefseqXP_013737901.11e-122PREDICTED: dof zinc finger protein DOF3.1-like
RefseqXP_013636419.11e-122PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotQ94AR66e-87DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBLA0A078JTQ91e-146A0A078JTQ9_BRANA; BnaC01g43680D protein
STRINGBra023888.1-P3e-96(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.17e-67DOF zinc finger protein 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]